PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.053600.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB
Protein Properties Length: 246aa    MW: 28132.4 Da    PI: 5.9667
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.053600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.8e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+ l+++++++G g+W++ ++  g+ R++k+c++rw +yl
   Cucsa.053600.1 14 KGPWTPEEDQTLINYINLYGHGNWRALPKQAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP

2Myb_DNA-binding55.41.4e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE+e +++++++lG++ W++Ia++++ gRt++++k+ w+++l
   Cucsa.053600.1  67 RGNFTAEEEETIINLHQMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112
                      89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-26564IPR009057Homeodomain-like
PROSITE profilePS5129417.344961IPR017930Myb domain
SuperFamilySSF466899.68E-3210108IPR009057Homeodomain-like
SMARTSM007176.5E-151363IPR001005SANT/Myb domain
PfamPF002499.4E-171461IPR001005SANT/Myb domain
CDDcd001671.45E-111661No hitNo description
PROSITE profilePS5129425.37162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-2765116IPR009057Homeodomain-like
SMARTSM007174.9E-1566114IPR001005SANT/Myb domain
PfamPF002493.9E-1667112IPR001005SANT/Myb domain
CDDcd001679.32E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MVRAPCCEKM GLKKGPWTPE EDQTLINYIN LYGHGNWRAL PKQAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF TAEEEETIIN LHQMLGNRWS AIAARLPGRT DNEIKNVWHT HLKKRLRQNY  120
ATPQLRNYPV MNEEESIAQQ PFKYTNYGSM PSSALAFSPP HCSSESSSII TAENGESWTN  180
NLPEADENFW REVLGSDQMA TVGNQQGFEG ETSERQLGNL TNEQPTHETT DFWTIFFQEE  240
GIYLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28121165108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKKRLRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818270.0LN681827.1 Cucumis melo genomic scaffold, anchoredscaffold00018.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004151985.10.0PREDICTED: myb-related protein Myb4-like
TrEMBLB9H8L98e-91B9H8L9_POPTR; Uncharacterized protein
STRINGPOPTR_0005s24550.12e-90(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-77myb domain protein 14